Gene Regulatory Network Inference

Please find bellow the links to the lectures slides.

• Overview and content

• Regulation in Biology

• Gene Regulatory Network Inference

• GRN inference based on classification algorithms

• GRN inference based on ensemble learning

• Generalizable Gene Self-Expressive Network

Please find bellow the links to the practical work jupyter notebooks (download and run the notebooks).

• Gene Regulatory Network Inference using GENIE3 (tutorial)

• Random Forest Algorithm (tutorial)

• Regression Tree (tutorial)

• Feature Selection Algorithms (tutorial)

• Comparison of Inference Methods (exercise)

• Comparison of Inference Methods (answer)